Kouyos, Roger: search on Z-Library

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1

Population biological principles of drug-resistance evolution in infectious diseases

Pia Abel zur Wiesch, Roger Kouyos, Jan Engelstädter, Roland R Regoes, Sebastian Bonhoeffer

Journal:

The Lancet Infectious Diseases

Year:

2011

Language:

english

File:

PDF, 256 KB

english, 2011

2

Bridging the gap between HIV epidemiology and antiretroviral resistance evolution: Modelling the spread of resistance in South Africa

Hauser, Anthony, Kusejko, Katharina, Johnson, Leigh F., Wandeler, Gilles, Riou, Julien, Goldstein, Fardo, Egger, Matthias, Kouyos, Roger D., Thiebaut, Rodolphe

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 3.74 MB

2019

3

Inferring transmission heterogeneity using virus genealogies: Estimation and targeted prevention

Zhang, Yunjun, Leitner, Thomas, Albert, Jan, Britton, Tom, Kouyos, Roger Dimitri

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 4.96 MB

2020

4

Cohort-derived machine learning models for individual prediction of chronic kidney disease in people living with HIV: a prospective multicentre cohort study

Roth, Jan A, Radevski, Gorjan, Marzolini, Catia, Rauch, Andri, GÃ¼nthard, Huldrych F, Kouyos, Roger D, Fux, Christoph A, Scherrer, Alexandra U, Calmy, Alexandra, Cavassini, Matthias, Kahlert, Christia

Journal:

The Journal of Infectious Diseases

Year:

2020

File:

PDF, 1.21 MB

2020

5

Lower Broadly Neutralizing Antibody Responses in Female Versus Male HIV-1 Infected Injecting Drug Users

EULER, Zelda, VAN DEN KERKHOF, Tom L., KOUYOS, Roger D., TULLY, Damien C., ALLEN, Todd M., TRKOLA, Alexandra, SANDERS, Rogier W., SCHUITEMAKER, Hanneke, VAN GILS, Marit J.

Journal:

Year:

2019

Language:

english

File:

PDF, 729 KB

english, 2019

6

Predictors of virological failure and time to viral suppression of first line integrase inhibitor based antiretroviral treatment

Pyngottu, Ashima, Scherrer, Alexandra U, Kouyos, Roger, Huber, Michael, Hirsch, Hans, Perreau, Matthieu, Yerly, Sabine, Calmy, Alexandra, Cavassini, Matthias, StÃ¶ckle, Marcel, Furrer, Hansjakob, Vern

Journal:

Clinical Infectious Diseases

Year:

2020

File:

PDF, 829 KB

2020

7

Stochastic or deterministic: what is the effective population size of HIV-1?

Roger D. Kouyos, Christian L. Althaus, Sebastian Bonhoeffer

Journal:

Trends in Microbiology

Year:

2006

Language:

english

File:

PDF, 375 KB

english, 2006

8

Implementation and evaluation of a care bundle for prevention of non-ventilator-associated hospital-acquired pneumonia (nvHAP) â a mixed-methods study protocol for a hybrid type 2 effectiveness-implementation trial

Wolfensberger, Aline, Clack, Lauren, Stefanie, von Felten, Kusejko, Katharina, Hesse, Mirjam Faes, Jakob, Werner, Saleschus, Dirk, Meier, Marie-Theres, Kouyos, Roger, Held, Leonhard, Sax, Hugo

Journal:

BMC Infectious Diseases

Year:

2020

File:

PDF, 1.22 MB

2020

9

Bridging the gap between HIV epidemiology and antiretroviral resistance evolution: Modelling the spread of resistance in South Africa

Hauser, Anthony, Kusejko, Katharina, Johnson, Leigh F., Wandeler, Gilles, Riou, Julien, Goldstein, Fardo, Egger, Matthias, Kouyos, Roger D., Thiebaut, Rodolphe

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.74 MB

english, 2019

10

On the potential of a short-term intensive intervention to interrupt HCV transmission in HIV-positive men who have sex with men: a mathematical modelling study

Salazar-Vizcaya, Luisa, Kouyos, Roger D., Fehr, Jan, Braun, Dominique, Estill, Janne, Bernasconi, Enos, Delaloye, Julie, Stöckle, Marcel, Schmid, Patrick, Rougemont, Mathieu, Wandeler, Gilles, Günthar

Journal:

Journal of Viral Hepatitis

Year:

2017

Language:

english

File:

PDF, 594 KB

english, 2017

11

The impact of vaccination on the breadth and magnitude of the antibody response to influenza A viruses in HIV-infected individuals

Kohler, Ines, Kouyos, Roger, Bianchi, Matteo, Grube, Christina, Wyrzucki, Arkadiusz, Günthard, Huldrych F., Hangartner, Lars

Journal:

Year:

2015

Language:

english

File:

PDF, 329 KB

english, 2015

12

Hepatitis C virus transmission among HIV-infected men who have sex with men: Modeling the effect of behavioral and treatment interventions

Salazar-Vizcaya, Luisa, Kouyos, Roger D, Zahnd, Cindy, Wandeler, Gilles, Battegay, Manuel, Darling, Katharine Elizabeth Ana, Bernasconi, Enos, Calmy, Alexandra, Vernazza, Pietro, Furrer, Hansjakob, Eg

Journal:

Year:

2016

Language:

english

File:

PDF, 2.07 MB

english, 2016

13

High Cure Rates With Grazoprevir-Elbasvir With or Without Ribavirin Guided by Genotypic Resistance Testing Among Human Immunodeficiency Virus/Hepatitis C Virus–coinfected Men Who Have Sex With Men

Braun, Dominique L, Hampel, Benjamin, Kouyos, Roger, Nguyen, Huyen, Shah, Cyril, Flepp, Markus, Stöckle, Marcel, Conen, Anna, Béguelin, Charles, Künzler-Heule, Patrizia, Nicca, Dunja, Schmid, Patrick,

Journal:

Clinical Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 275 KB

english, 2018

14

Modeling the effect of HIV coinfection on clearance and sustained virologic response during treatment for hepatitis C virus

Birger, Ruthie, Kouyos, Roger, Dushoff, Jonathan, Grenfell, Bryan

Journal:

Year:

2015

Language:

english

File:

PDF, 1.56 MB

english, 2015

15

Rational Design and Adaptive Management of Combination Therapies for Hepatitis C Virus Infection

Ke, Ruian, Loverdo, Claude, Qi, Hangfei, Sun, Ren, Lloyd-Smith, James O., Kouyos, Roger Dimitri

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 2.04 MB

english, 2015

16

Efficient microbial colony growth dynamics quantification with ColTapp, an automated image analysis application

BÃ¤r, Julian, Boumasmoud, Mathilde, Kouyos, Roger D., Zinkernagel, Annelies S., Vulin, ClÃ©ment

Journal:

Scientific Reports

Year:

2020

File:

PDF, 5.07 MB

2020

17

Inferring Epidemic Contact Structure from Phylogenetic Trees

Leventhal, Gabriel E., Kouyos, Roger, Stadler, Tanja, von Wyl, Viktor, Yerly, Sabine, Böni, Jürg, Cellerai, Cristina, Klimkait, Thomas, Günthard, Huldrych F., Bonhoeffer, Sebastian, Tanaka, Mark M.

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.16 MB

english, 2012

18

Phylogenetic Approach Reveals That Virus Genotype Largely Determines HIV Set-Point Viral Load

Alizon, Samuel, von Wyl, Viktor, Stadler, Tanja, Kouyos, Roger D., Yerly, Sabine, Hirschel, Bernard, Böni, Jürg, Shah, Cyril, Klimkait, Thomas, Furrer, Hansjakob, Rauch, Andri, Vernazza, Pietro L., Be

Journal:

Year:

2010

Language:

english

File:

PDF, 497 KB

english, 2010

19

Hospital-Community Interactions Foster Coexistence between Methicillin-Resistant Strains of Staphylococcus aureus

Kouyos, Roger, Klein, Eili, Grenfell, Bryan, Levin, Bruce R.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.56 MB

english, 2013

20

Erratum to: ‘The potential impact of coinfection on antimicrobial chemotherapy and drug resistance’

Birger, Ruthie B., Kouyos, Roger D., Cohen, Ted, Griffiths, Emily C., Huijben, Silvie, Mina, Michael J., Volkova, Victoriya, Grenfell, Bryan, Metcalf, C. Jessica E.

Journal:

Trends in Microbiology

Year:

2015

Language:

english

File:

PDF, 187 KB

english, 2015

21

Can directionality of HIV transmission be predicted by next generation sequencing data?

Günthard, Huldrych F, Kouyos, Roger

Journal:

The Journal of Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 306 KB

english, 2018

22

The state of affairs in the kingdom of the Red Queen

Marcel Salathé, Roger D. Kouyos, Sebastian Bonhoeffer

Journal:

Trends in Ecology & Evolution

Year:

2008

Language:

english

File:

PDF, 541 KB

english, 2008

23

Molecular Epidemiology Reveals Long‐Term Changes in HIV Type 1 Subtype B Transmission in Switzerland

Kouyos, Roger D., von Wyl, Viktor, Yerly, Sabine, Böni, Jürg, Taffé, Patrick, Shah, Cyril, Bürgisser, Philippe, Klimkait, Thomas, Weber, Rainer, Hirschel, Bernard, Cavassini, Matthias, Furrer, Hansjak

Journal:

The Journal of Infectious Diseases

Year:

2010

Language:

english

File:

PDF, 1.44 MB

english, 2010

24

Quantifying Type-Specific Reproduction Numbers for Nosocomial Pathogens: Evidence for Heightened Transmission of an Asian Sequence Type 239 MRSA Clone

Cooper, Ben S., Kypraios, Theodore, Batra, Rahul, Wyncoll, Duncan, Tosas, Olga, Edgeworth, Jonathan D., Kouyos, Roger

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 542 KB

english, 2012

25

Quantifying the roles of vomiting, diarrhea, and residents vs. staff in norovirus transmission in U.S. nursing home outbreaks

Adams, Carly, Young, David, GastaÃ±aduy, Paul A., Paul, Prabasaj, Marsh, Zach, Hall, Aron J., Lopman, Benjamin A., Kouyos, Roger Dimitri

Journal:

PLoS Computational Biology

Year:

2020

Language:

english

File:

PDF, 2.08 MB

english, 2020

26

The role of epistasis on the evolution of recombination in host–parasite coevolution

Roger D. Kouyos, Marcel Salathé, Sarah P. Otto, Sebastian Bonhoeffer

Journal:

Theoretical Population Biology

Year:

2009

Language:

english

File:

PDF, 4.66 MB

english, 2009

27

Large-scale inference of conjunctive Bayesian networks

Montazeri, Hesam, Kuipers, Jack, Kouyos, Roger, Böni, Jürg, Yerly, Sabine, Klimkait, Thomas, Aubert, Vincent, Günthard, Huldrych F., Beerenwinkel, Niko

Journal:

Year:

2016

Language:

english

File:

PDF, 402 KB

english, 2016

28

Dietary Patterns and Physical Activity Correlate With Total Cholesterol Independently of Lipid-Lowering Drugs and Antiretroviral Therapy in Aging People Living With Human Immunodeficiency Virus

Marzel, Alex, Kouyos, Roger D, Reinschmidt, Sara, Balzer, Katharina, Garon, Fabienne, Spitaleri, Monica, Matthes, Nicolas, Suter, Paolo, Weber, Rainer, Staehelin, Cornelia, Lecompte, Thanh Doco, Tarr,

Journal:

Open Forum Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 663 KB

english, 2018

29

Assessment of Overlap of Phylogenetic Transmission Clusters and Communities in Simple Sexual Contact Networks: Applications to HIV-1

Villandre, Luc, Stephens, David A., Labbe, Aurelie, Günthard, Huldrych F., Kouyos, Roger, Stadler, Tanja, Braunstein, Lidia Adriana

Journal:

Year:

2016

Language:

english

File:

PDF, 2.39 MB

english, 2016

30

Inference on dengue epidemics with Bayesian regime switching models

Lim, Jue Tao, Dickens, Borame Sue, Haoyang, Sun, Ching, Ng Lee, Cook, Alex Richard, Kouyos, Roger Dimitri

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 3.68 MB

2020

31

Cycling Empirical Antibiotic Therapy in Hospitals: Meta-Analysis and Models

Abel zur Wiesch, Pia, Kouyos, Roger, Abel, Sören, Viechtbauer, Wolfgang, Bonhoeffer, Sebastian, Wilke, Claus O.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.06 MB

english, 2014

32

Emergence of acquired HIV-1 drug resistance has almost been stopped in Switzerland - a 15 year prospective cohort analysis

Scherrer, Alexandra U., von Wyl, Viktor, Yang, Wan-Lin, Kouyos, Roger, Böni, Jürg, Yerly, Sabine, Klimkait, Thomas, Aubert, Vincent, Cavassini, Matthias, Battegay, Manuel, Furrer, Hansjakob, Calmy, Al

Journal:

Clinical Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 1.02 MB

english, 2016

33

Hepatitis C infection and the risk of non-liver-related morbidity and mortality in HIV-positive persons in the Swiss HIV Cohort Study

Kovari, Helen, Rauch, Andri, Kouyos, Roger, Rougemont, Mathieu, Cavassini, Matthias, Schmid, Patrick, Stöckle, Marcel, Bernasconi, Enos, Weber, Rainer, Ledergerber, Bruno

Journal:

Clinical Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 749 KB

english, 2016

34

High Rates of Subsequent Asymptomatic Sexually Transmitted Infections and Risky Sexual Behavior in Patients Initially Presenting With Primary Human Immunodeficiency Virus-1 Infection

Braun, Dominique L, Marzel, Alex, Steffens, Daniela, Schreiber, Peter W, Grube, Christina, Scherrer, Alexandra U, Kouyos, Roger D, Günthard, Huldrych F, Anagnostopoulos, A, Aubert, V, Battegay, M, Ber

Journal:

Clinical Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 1.72 MB

english, 2018

35

Prescription of Postexposure Prophylaxis for HIV-1 in the Emergency Room

Marzel, Alex, Heinrich, Henriette, Schilliger, Lukas, Fehr, Jan S., Günthard, Huldrych F., Kouyos, Roger, Rampini, Silvana K.

Journal:

JAIDS Journal of Acquired Immune Deficiency Syndromes

Year:

2017

Language:

english

File:

PDF, 435 KB

english, 2017

36

The Red Queen and the persistence of linkage-disequilibrium oscillations in finite and infinite populations

Roger D Kouyos, Marcel Salathé, Sebastian Bonhoeffer

Journal:

BMC Evolutionary Biology

Year:

2007

Language:

english

File:

PDF, 1.83 MB

english, 2007

37

Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase

Mostowy, Rafal, Kouyos, Roger D., Hoof, Ilka, Hinkley, Trevor, Haddad, Mojgan, Whitcomb, Jeannette M., Petropoulos, Christos J., Keşmir, Can, Bonhoeffer, Sebastian, Peters, Bjoern

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 666 KB

english, 2012

38

Rapid Parasite Adaptation Drives Selection for High Recombination Rates

Marcel Salathé, Roger D. Kouyos, Roland R. Regoes and Sebastian Bonhoeffer

Journal:

Year:

2008

Language:

english

File:

PDF, 986 KB

english, 2008

39

Development of a high-throughput bead based assay system to measure HIV-1 specific immune signatures in clinical samples

Liechti, Thomas, Kadelka, Claus, Ebner, Hanna, Friedrich, Nikolas, Kouyos, Roger D., Günthard, Huldrych F., Trkola, Alexandra

Journal:

Journal of Immunological Methods

Year:

2017

Language:

english

File:

PDF, 1.28 MB

english, 2017

40

Cost-effectiveness of low-dose CT screening for lung cancer in a European country with high prevalence of smoking—A modelling study

Tomonaga, Yuki, ten Haaf, Kevin, Frauenfelder, Thomas, Kohler, Malcolm, Kouyos, Roger D., Shilaih, Mohaned, Lorez, Matthias, de Koning, Harry J., Schwenkglenks, Matthias, Puhan, Milo A.

Journal:

Year:

2018

Language:

english

File:

PDF, 478 KB

english, 2018

41

Tracing HIV-1 strains that imprint broadly neutralizing antibody responses

Kouyos, Roger D., Rusert, Peter, Kadelka, Claus, Huber, Michael, Marzel, Alex, Ebner, Hanna, Schanz, Merle, Liechti, Thomas, Friedrich, Nikolas, Braun, Dominique L., Scherrer, Alexandra U., Weber, Jac

Journal:

Year:

2018

Language:

english

File:

PDF, 4.44 MB

english, 2018

42

Early prediction of antigenic transitions for influenza A/H3N2

Castro, Lauren A., Bedford, Trevor, Ancel Meyers, Lauren, Kouyos, Roger Dimitri

Journal:

PLoS Computational Biology

Year:

2020

Language:

english

File:

PDF, 3.05 MB

english, 2020

43

Epistasis between deleterious mutations and the evolution of recombination

Roger D. Kouyos, Olin K. Silander, Sebastian Bonhoeffer

Journal:

Trends in Ecology & Evolution

Year:

2007

Language:

english

File:

PDF, 484 KB

english, 2007

44

Loss to follow-up of HIV-infected women after delivery: The Swiss HIV Cohort Study and the Swiss Mother and Child HIV Cohort Study

Aebi-Popp, Karoline, Kouyos, Roger, Bertisch, Barbara, Staehelin, Cornelia, Hoesli, Irene, Rickenbach, Martin, Thorne, Claire, Grawe, Claudia, Bernasconi, Enos, Cavassini, Matthias, Martinez de Tejada

Journal:

Journal of the International AIDS Society

Year:

2014

Language:

english

File:

PDF, 75 KB

english, 2014

45

Calibration of individual-based models to epidemiological data: A systematic review

Hazelbag, C. Marijn, Dushoff, Jonathan, Dominic, Emanuel M., Mthombothi, Zinhle E., Delva, Wim, Kouyos, Roger Dimitri

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 1.62 MB

2020

46

Recombination and drug resistance in HIV: Population dynamics and stochasticity

Roger D. Kouyos, David Fouchet, Sebastian Bonhoeffer

Journal:

Year:

2009

Language:

english

File:

PDF, 672 KB

english, 2009

47

Predicting the Evolution of Sex on Complex Fitness Landscapes

Misevic, Dusan, Kouyos, Roger D., Bonhoeffer, Sebastian, Bergstrom, Carl T.

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 438 KB

english, 2009

48

No Effect of Pegylated Interferon-alpha on Total Hiv-1 DNA Load in HIV-1/HCV Coinfected Patients

Strouvelle, Victoria P, Braun, Dominique L, Vongrad, Valentina, Scherrer, Alexandra U, Kok, Yik Lim, Kouyos, Roger D, Stöckle, Marcel, Rauch, Andri, Darling, Katharine, Hoffmann, Matthias, Metzner, Ka

Journal:

The Journal of Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 462 KB

english, 2018

49

Corrigendum to “Rational design of HIV-1 fluorescent hydrolysis probes considering phylogenetic variation and probe performance” [J. Virol. Methods 165 (2010) 151–160]

Claudia F. Althaus, Sara Gianella, Philip Rieder, Viktor von Wyl, Roger D. Kouyos, Barbara Niederöst, Adrian Schmid, Karin J. Metzner, Beda Joos, Huldrych F. Günthard, Marek Fischer

Journal:

Journal of Virological Methods

Year:

2011

Language:

english

File:

PDF, 82 KB

english, 2011

50

Similar Impact of CD8+ T Cell Responses on Early Virus Dynamics during SIV Infections of Rhesus Macaques and Sooty Mangabeys

Kouyos, Roger D., Gordon, Shari N., Staprans, Silvija I., Silvestri, Guido, Regoes, Roland R., De Boer, Rob J.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 412 KB

english, 2010

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